The manual I think is for a Noir with the Tekken 6 pcb installed? The manual definitely shows the system 357. I ordered some JST VH, only cost $10 so I guess I'll try those first. If those don't work I'll look at the XAP-02V-1. Here are some more pics of the connector.That does not look like JST VH.
It's a connector for a motherboard fan? A cabinet schematic won't show connections inside a motherboard.
It looks more like the XA series. Check XAP-02V-1.